Biological control of Rhizoctonia root rot on bean by phenazine- and cyclic lipopeptide-producing Pseudomonas CMR12a     

D'aes J  Hua GK  De Maeyer K  Pannecoucque J  Forrez I  Ongena M  Dietrich LE  Thomashow LS  Mavrodi DV  Höfte M 《Phytopathology》2011,101(8):996-1004

Pseudomonas CMR12a was previously selected as an efficient biocontrol strain producing phenazines and cyclic lipopeptides (CLPs). In this study, biocontrol capacity of Pseudomonas CMR12a against Rhizoctonia root rot of bean and the involvement of phenazines and CLPs in this ability were tested. Two different anastomosis groups (AGs) of Rhizoctonia solani, the intermediately aggressive AG 2-2 and the highly aggressive AG 4 HGI, were included in growth-chamber experiments with bean plants. The wild-type strain CMR12a dramatically reduced disease severity caused by both R. solani AGs. A CLP-deficient and a phenazine-deficient mutant of CMR12a still protected bean plants, albeit to a lesser extent compared with the wild type. Two mutants deficient in both phenazine and CLP production completely lost their biocontrol activity. Disease-suppressive capacity of CMR12a decreased after washing bacteria before application to soil and thereby removing metabolites produced during growth on plate. In addition, microscopic observations revealed pronounced branching of hyphal tips of both R. solani AGs in the presence of CMR12a. More branched and denser mycelium was also observed for the phenazine-deficient mutant; however, neither the CLP-deficient mutant nor the mutants deficient in both CLPs and phenazines influenced hyphal growth. Together, results demonstrate the involvement of phenazines and CLPs during Pseudomonas CMR12a-mediated biocontrol of Rhizoctonia root rot of bean.  相似文献   

Microbial immobilisation of C rhizodeposits in rhizosphere and root-free soil under continuous C labelling of oats     

Ilya Yevdokimov  Reiner Ruser  Marc Marx 《Soil biology & biochemistry》2006,38(6):1202-1211

A greenhouse experiment was conducted by growing oats (Avenasativa L.) in a continuously ¹³CO₂ labeled atmosphere. The allocation of ¹³C-labeled photosynthates in plants, microbial biomass in rhizosphere and root-free soil, pools of soil organic C, and CO₂ emissions were examined over the plant's life cycle. To isolate rhizosphere from root-free soil, plant seedlings were placed into bags made of nylon monofilament screen tissue (16 μm mesh) filled with soil. Two peaks of ¹³C in rhizosphere pools of microbial biomass and dissolved organic carbon (DOC), as well as in CO₂ emissions at the earing and ripeness stages were revealed. These ¹³C maxima corresponded to: (i) the end of rapid root growth and (ii) beginning of root decomposition, respectively. The δ¹³C values of microbial biomass were higher than those of DOC and of soil organic matter (SOM). The microbial biomass C accounted for up to 56 and 39% of ¹³C recovered in the rhizosphere and root-free soil, respectively. Between 4 and 28% of ¹³C assimilated was recovered in the root-free soil. Depending on the phenological stage, the contribution of root-derived C to total CO₂ emission from soil varied from 61 to 92% of total CO₂ evolved, including 4-23% attributed to rhizomicrobial respiration. While 81-91% of C substrates used for microbial growth in the root-free soil and rhizosphere came from SOM, the remaining 9-19% of C substrates utilized by the microbial biomass was attributable to rhizodeposition. The use of continuous isotopic labelling and physical separation of root-free and rhizosphere soil, combined with natural ¹³C abundance were effective in gaining new insight on soil and rhizosphere C-cycling.  相似文献   

Determination of total N-nitroso compounds by chemical denitrosation using CuCl     

Wang J  Chan WG  Haut SA  Krauss MR  Izac RR  Hempfling WP 《Journal of agricultural and food chemistry》2005,53(12):4686-4691

A method for the determination of total N-nitroso compounds (NOC) by chemical denitrosation and subsequent chemiluminescence detection of evolved NO is described. Denitrosation was accomplished with CuCl in HCl at 70 degrees C. The detection limit for N-nitrosoproline (NPRO) was 1 pmol. NO formation from NPRO was linear (R(2) = 0.999) from 4 pmol to 2 nmol. Among the possible interfering compounds tested, only S-nitroso compounds contribute any significant interference. This method had several advantages over other similar methods: (1) A commercially available one-piece reaction vessel and a NO analyzer with software were used. (2) NO release occurred rapidly and was easily measured and quantified. (3) Compared to HBr or HI, CuCl was more convenient to work with and safe. (4) CuCl was suitable for samples in aqueous and most organic solvents. The application of this method to food, personal care products, and human body fluids demonstrates its utility.  相似文献   

Activity and process stability of purified green pepper (Capsicum annuum) pectin methylesterase     

Castro SM  Van Loey A  Saraiva JA  Smout C  Hendrickx M 《Journal of agricultural and food chemistry》2004,52(18):5724-5729

Pectin methylesterase (PME) from green bell peppers (Capsicum annuum) was extracted and purified by affinity chromatography on a CNBr-Sepharose-PMEI column. A single protein peak with pectin methylesterase activity was observed. For the pepper PME, a biochemical characterization in terms of molar mass (MM), isoelectric points (pI), and kinetic parameters for activity and thermostability was performed. The optimum pH for PME activity at 22 degrees C was 7.5, and its optimum temperature at neutral pH was between 52.5 and 55.0 degrees C. The purified pepper PME required the presence of 0.13 M NaCl for optimum activity. Isothermal inactivation of purified pepper PME in 20 mM Tris buffer (pH 7.5) could be described by a fractional conversion model for lower temperatures (55-57 degrees C) and a biphasic model for higher temperatures (58-70 degrees C). The enzyme showed a stable behavior toward high-pressure/temperature treatments.  相似文献   

Chemical discrimination of arabica and robusta coffees by Fourier transform Raman spectroscopy   总被引：1，自引：0，他引：1  

Rubayiza AB  Meurens M 《Journal of agricultural and food chemistry》2005,53(12):4654-4659

This article deals with the potential of Fourier transform (FT) Raman spectroscopy in discrimination of botanical species of green and roasted coffees. There are two species of commercial importance: Coffea arabica (arabica) and Coffea canephora (robusta). It is recognized that they differ in their lipid fraction, especially in the content of the diterpene kahweol, which is present at 0.1-0.3% dry matter basis in arabica beans and only in traces (<0.01%) in robusta. The visual examination of the Raman spectra of the lipid fraction extracted from arabica, robusta and liberica samples shows differences in the mid-wavenumbers region: arabica spectra have two characteristic scattering bands at 1567 and 1478 cm(-1). The spectrum of the pure kahweol shows the same bands. Principal component analysis is applied to the spectra and reveals clustering according to the coffee species. The first principal component (PC1) explains 93% of the spectral variation and corresponds to the kahweol concentration. Using the PC1 score plot, two groups of arabica can be distinguished as follows: one group with high kahweol content and another group with low kahweol content. The first group includes samples coming from Kenya and Jamaica; the second group includes samples from Australia. The main difference between these coffees is that those from Kenya and Jamaica are well-known for growing at a high altitude whereas those ones from Australia are grown at a low altitude. To our knowledge, the application of Raman spectroscopy has never been used in coffee analysis.  相似文献   

An Easy Method to Measure Total Particulate Hg in Water Without Chemical Digestion     

Sarica  José  Amyot  Marc  Hare  Landis 《Water, air, and soil pollution》2004,151(1-4):3-10

Particle transport often plays an important role in trace metal cycling in aquatic systems. In this study, we propose a simple method to estimate total particulate Hg in water using combustion as a treatment prior to analysis as opposed to conventional chemical digestion. We also present a field validation of this method in a stream. We sampled water from a stream 24 and 48 h after a heavy storm to obtain two sets of water samples with contrasting particulate Hg levels. Measurements of particulate and dissolved Hg using our new direct combustion method compared favorably with those of total Hg in unfiltered samples (112 ± 15 %). U.S. E.P.A. standard method 1631 gave similar dissolved Hg levels but different particulate Hg levels (calculated as the difference between total and dissolved Hg concentrations) than those obtained with our new method. We suggest that this discrepancy is explained by the propagation of errors resulting from the several calculation steps used in the standard method. Our new method gives reliable results, without labor intensive and costly chemical digestion and analysis of filters.  相似文献   

Identification on commercialized products of AFLP markers able to discriminate slow- from fast-growing chicken strains   总被引：2，自引：0，他引：2  

Fumière O  Dubois M  Grégoire D  Théwis A  Berben G 《Journal of agricultural and food chemistry》2003,51(5):1115-1119

The European chicken meat market is characterized by numerous quality marks: "Label de Qualité Wallon" in Belgium, "Label Rouge" in France, denominations of geographical origin, organic agriculture, etc. Most of those certified productions have specifications requiring the use of slow-growing chicken strains. The amplified fragment length polymorphism (AFLP) technique has been used to search molecular markers able to discriminate slow-growing chicken strains from fast-growing ones and to authenticate certified products. Two pairs of restriction enzymes (EcoRI/MseI and EcoRI/TaqI) and 121 selective primer combinations were tested on individual DNA samples from chicken products essentially in carcass form that were ascribed as belonging to either slow- or fast-growing strains. Within the resulting fingerprints, two fragments were identified as type-strains specific markers. One primer combination gives a band (333 bp) that is specific for slow-growing chickens, and another primer pair generates a band (372 bp) that was found to be characteristic of fast-growing chickens. The two markers were isolated, cloned, and sequenced. The effectiveness and the specificity of the two interesting determinants were assessed on individuals of two well-known strains (ISA 657 and Cobb 500) and on commercialized products coming from various origins.  相似文献   

Microbial community changes in heathland soil communities along a geographical gradient: interaction with climate change manipulations     

Alwyn Sowerby  Bridget Emmett  Albert Tietema  Marc Estiarte  Steven Hughes 《Soil biology & biochemistry》2005,37(10):1805-1813

Climate change constitutes a serious threat for European heathlands as unlike other sources of damage, such as over-grazing, local remediation is not a possibility. Within the large pan-European projects, CLIMOOR and VULCAN, the effect of periodic drought and increased temperature were investigated in four heathland ecosystems along a geographical and climatic gradient across Europe. Fluorogenically labelled substrates for four enzymes (glucosidase, sulphatase, phosphatase, leucine amino peptidase) were used to measure extra-cellular enzyme activity in soil samples from each of the CLIMOOR sites. Microbial extra-cellular enzyme production is linked to microbial activity as well as soil physico-chemical properties, making soil enzymes one of the more reactive components of terrestrial ecosystems and potentially excellent indicators of soil microbial functional status and diversity.Across all sites and over all the substrates, organic matter content was exponentially, inversely related to enzyme activity. Although the increase in temperature produced by the CLIMOOR roofs was small (on average 0.9 °C), this was sufficient to increase enzyme activity in all sites (on average by 45%). The increase was within the range of seasonal variability at each of the sites. The effect of drought on enzyme activity was more pronounced in the Northern European sites than the southern European, and most moisture limited, site. This suggests that the effect of temperature increases may be observed across all regions; however, the soils of northern Europe may be more sensitive to changes in rainfall patterns than more moisture limited Southern European soils.  相似文献   

Seasonal patterns of root-surface phosphatase activities in a Mediterranean shrubland. Responses to experimental warming and drought   总被引：2，自引：0，他引：2  

Jordi Sardans  Josep Peñuelas  Marc Estiarte 《Biology and Fertility of Soils》2007,43(6):779-786

Mediterranean ecosystems are water limited and the current general circulation Models (GCM) and ecophysiological models forecast a warming and a further increase of drought in the next decades. A stronger water stress can decrease the capacity for nutrient absorption by plants. We conducted a field experiment to simulate forecasted drought and warming in a Mediterranean calcareous shrubland to assess the performance of root-surface phosphatase activities of the dominant shrub Globularia alypum. These enzyme activities were higher in autumn and spring, when the climate conditions were optimal for plant activity, than in summer or winter, when there was either lack of water or cold temperatures. A decrease in soil moisture in drought plots decreased root-surface phosphatase activity (29% in summer and 25% in autumn). The decrease in root-surface phosphatase activity in drought plots coincided with a decrease in P leaf concentrations and P accumulation in aboveground biomass and loss of photosynthetic capacity of some dominant shrub species of this ecosystem, and with a tendency to increase total soil-P. These results suggest that the expected drier conditions in this Mediterranean shrubland in the next decades will slow down the P uptake by plants, thereby, diminishing the P contents in biomass and increasing total P contents in soil in non-available forms and that this can be, in part, attributable to a result of the decrease in root-surface phosphatase activity.  相似文献   

Central Venous Pressure Measurements in the Caudal Vena Cava of Sedated Cats     

Roslyn G. Machon B.V.Sc.  M.V.Sc.  M.S.    Marc R. Raffe D.V.M. M.S.  Elaine P. Robinson B.Vet.Med.  M.V.Sc. 《Journal of Veterinary Emergency and Critical Care》1995,5(2):121-129

The caudla vena cava (CVA) was evaluated as an laternative site for the measurement of central venous pressure (CPV) in six healthy, sedated (ketamine 10 mg/km, midazolam 0.1 mg/kg, and atropine 0.04 mg/kg IM) cats. The CVC was cathererized via medial saphenous puncture, and estimates of CPV from this site compared to those obtained via a jugular catheter. Simulataneous CPV values were recorded electronically (mmgh), via calibrated pressure transducer positioned at the level of the manubrium in cats in lateral recumbency. Five readings, performed at 1 minute intervals, were collected from the jugular and CVC catheters at rest (baseline) and following a rapid fluid bolus. Twenty-four hours later, cats were resedated, baseline measurements repeated, and CVPs recorded following a rapid, 25% whole-blood volume bleed. CVP measurements from the jugular and CVC were statistically compared using repeated measures ANOVA (p<0.05). There were no significant differences between the two sites in the baseline and bleed trials. Significant defferences between jugular and CVC CVPs were noted at 1 and 2 minutes following the fluid bolus. It was concluded that CVC is an alternative site for measurement of CPV in sedated cats.  相似文献